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Get Fishery and Survey Selectivity Plots

get_selex_plot.Rd

Generates age- or length-based selectivity plots for all fishery and survey fleets across one or more SPoRC model runs. Selectivity curves are faceted by sex, region, and fleet, and colored by year when multiple years are requested, allowing visualization of time-varying selectivity alongside model comparisons.

Usage

get_selex_plot(rep, model_names, Selex_Type = "age", year_indx = NULL)

Arguments

rep

List of length n_models, where each element is a SPoRC report list (i.e. the output of obj$report() after optimization). Must contain fish_sel and srv_sel (age-based) and/or fish_sel_l and srv_sel_l (length-based) depending on Selex_Type.

model_names

Character vector of length n_models giving display names for each model run. Used as the linetype legend label.

Selex_Type

Character string specifying whether to plot age- or length-based selectivity. One of "age" (default) or "length". Must match the Selex_Type used when fitting the model (i.e. fish_sel_l / srv_sel_l are only populated when Selex_Type = 1 in the model).

year_indx

Integer or integer vector of year indices to include in the plot. When multiple years are supplied, curves are colored by year on a continuous viridis scale, making time-variation in selectivity visible. If NULL (default), only the terminal year is plotted.

Value

A list of two ggplot objects:

[[1]] fish_sel_plot

Fishery selectivity curves faceted by Sex × (Region + Fleet). Lines are colored by year and distinguished by linetype across models.

[[2]] srv_sel_plot

Survey selectivity curves with identical faceting and aesthetic structure as the fishery plot.

See also

Other Plotting: get_biological_plot(), get_data_fitted_plot(), get_ts_plot(), plot_all_basic(), theme_sablefish()

Examples

if (FALSE) { # \dontrun{
  # Terminal year only
  plots <- get_selex_plot(list(rep1, rep2), c("Base", "Sensitivity"))

  # All years to visualize time-varying selectivity
  plots <- get_selex_plot(list(rep1), "Base", Selex_Type = "age", year_indx = 1:40)

  plots[[1]] # fishery selectivity
  plots[[2]] # survey selectivity
} # }