Builds the factor map for ln_sigmaR [2 x n_pop x n_regions], where
the first index is the initial deviation period and the second the annual one.
The recruitment penalty reads each region's own slot, and a population's
non-natal region slots are mapped off under rec_region_prop_spec = 1 with
several populations. Called by Setup_Mod_Rec.
Arguments
- input_list
Named list with
$data,$parand$map.- sigmaR_spec
Estimation structure for
ln_sigmaR."est_all"estimates each period, population and region separately."est_shared_r"estimates per period and population, shared across regions."est_shared_all"gives one value for everything."fix_early_est_late"holds the initial period at its starting value and estimates the annual one per population and region."fix"holds every value.