Map sex ratio parameters

Builds the factor map for sexratio_pars [n_pop x n_regions x n_sexratio_blocks], the proportion of recruits assigned to the first sex, where n_sexratio_blocks is the largest number of time blocks across population and region in $data$sexratio_blocks. Called by Setup_Mod_Rec.

Usage

do_sexratio_pars_mapping(input_list, sexratio_spec)

Arguments

input_list

Named list with $data, $par and $map. Requires $data$n_sexes, $data$n_pop, $data$n_regions, $data$sexratio_blocks and $data$rec_region_prop_spec.

sexratio_spec

Estimation structure for sexratio_pars. "est_all" gives one parameter per population, region and block, and is not permitted when rec_region_prop_spec = 1 and n_pop > 1. "est_shared_r" gives one per population and block, shared across its regions. "est_shared_pop_r" gives one per block across every population and region, and requires identical block structures. "fix" holds every parameter at its starting value and is required when n_sexes = 1.

Value

input_list with $map$sexratio_pars set to a factor vector of length prod(dim(par$sexratio_pars)). Active parameters take sequential integers, fixed or invalid cells are NA.