Map movement deviations and their process error parameters

Internal helper called by Setup_Mod_Movement. The deviations are a field over origin-destination pair, population, year, season, age and sex, every pair with its own, and every other dim is cut into blocks by its switch (move_dim_blocks): cells whose blocks agree on every dim share one deviation, and a cell with an inactive level on any dim, or a pair with no edge, holds none. The process error parameters are one log sd and two AR1 correlations per process error block of pairs, from move_pe_spec, with a correlation mapped off unless its dim is "ar1", all three mapped off under a dsem, and all three mapped off under "fix" (held at their starting value; any deviations are then estimated against that fixed sd); the unstructured correlations are estimated only under "us". Nothing is built when movement is fixed, the model has one region, or every switch is "none".

Usage

do_move_re_mapping(
  input_list,
  move_year_re,
  move_age_re,
  move_pop_re,
  move_seas_re,
  move_sex_re,
  move_pe_spec
)

Arguments

input_list

Named list with $data, $par and $map, with the move_re_* active sets already in $data.

move_year_re, move_age_re, move_pop_re, move_seas_re, move_sex_re, move_pe_spec

As in Setup_Mod_Movement.

Value

The input input_list with the factor maps of move_devs, move_pe_pars and the three correlation vectors, the integer mirror $data$map_move_devs, the pair table $data$move_pairs, the block of every population, year, season, age and sex in $data$move_*_block and the process error block of every pair in $data$move_pe_block.