Map Beverton-Holt steepness parameters — do_h

Builds the factor map for steepness_h [n_pop x n_regions]. Every element is NA under rec_model = 0, where steepness has no role. Called by Setup_Mod_Rec.

Usage

do_h_mapping(input_list, h_spec, rec_dd)

Arguments

input_list: Named list with $data, $par and $map. Requires $data$rec_model, $data$n_pop, $data$n_regions and $data$rec_dd.
h_spec: Sharing structure for steepness_h. "est_shared_pop_r" gives one value across every population and region, required when rec_dd = "global" and n_regions > 1. "est_shared_r" gives one per population. "fix" holds every value at its starting value. NULL estimates by population when n_pop > 1 and by region when n_pop = 1, and is not permitted under global density dependence with n_regions > 1.
rec_dd: Density dependence inherited from Setup_Mod_Rec. "global" restricts h_spec to "est_shared_r", "est_shared_pop_r" or "fix".

Value

input_list with $map$steepness_h set to a factor vector of length prod(dim(par$steepness_h)). Active parameters take sequential integers, unused ones are NA.