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Set Data Indicators to Unused for Specified Years

set_data_indicator_unused.Rd

Set Data Indicators to Unused for Specified Years

Usage

set_data_indicator_unused(
  data,
  unused_years,
  what = c("Catch", "FishIdx", "FishAgeComps", "FishLenComps", "SrvIdx", "SrvAgeComps",
    "SrvLenComps", "Tagging")
)

Arguments

data

Data list for RTMB model

unused_years

Integer vector specifying which years to mark as unused. Only years present in data$years are considered.

what

Character vector specifying which data types to modify. Possible values include:

"Catch"

Catch data indicators.

"FishIdx"

Fishery index data indicators.

"FishAgeComps"

Fishery age composition data indicators.

"FishLenComps"

Fishery length composition data indicators.

"SrvIdx"

Survey index data indicators.

"SrvAgeComps"

Survey age composition data indicators.

"SrvLenComps"

Survey length composition data indicators.

"Tagging"

Tagging data and associated cohorts.

Value

The modified data object, with indicators set to 0 for the specified years and tagging cohorts removed if relevant.

See also

Other Utility: fit_model(), get_logistN_Sigma(), get_par_est_info(), post_optim_sanity_checks(), rho_trans()