Model diagnostics for MCMC
Usage
mcmc_diag(mcmc_obj, tmb_sdrep, plot = TRUE, pars = NULL)
Arguments
- mcmc_obj
MCMC object from tmbstan
- tmb_sdrep
SD report fomr TMB
- plot
Whether or not to plot outputs
- pars
Parameters you want to plot out
Value
A list of plots with traditional MCMC diagnostics
Examples
if (FALSE) { # \dontrun{
diagnostic_plots <- mcmc_diag(mcmc_obj, tmb_sdrep, TRUE, pars = 'ln_M')
} # }