Set up simulation observation processes
Setup_Sim_Observation_Proc.Rd
Set up simulation observation processes
Usage
Setup_Sim_Observation_Proc(
Comp_Structure,
Comp_Srv_Like,
base_ISS_SrvAge,
Srv_Like_Pars,
Comp_Fish_Like,
base_ISS_FishAge,
ISS_FishAge_Pattern,
Tag_Like,
Tag_Like_Pars,
SrvAgeTheta,
FishAgeTheta,
sim_list
)
Arguments
- Comp_Structure
Composition Structure (spltR_spltS, spltR_jntS)
- Comp_Srv_Like
Survey Composition Likelihoods (Multinomial, Dirichlet-Multinomial, iid-Logistic-Normal)
- base_ISS_SrvAge
Input sample size for survey ages
- Srv_Like_Pars
Parameters for Survey Composition Likelihoods
- Comp_Fish_Like
Fishery Composition Likelihoods (Multinomial, Dirichlet-Multinomial, iid-Logistic-Normal)
- base_ISS_FishAge
Base Input sample size for fishery ages
- ISS_FishAge_Pattern
Input sample size pattern for fishery ages. Either "constant" or follows an f pattern ("F_pattern")
- Tag_Like
Tag Likelihoods (Poisson, NegBin, Multinomial_Release, Multinomial_Recapture)
- Tag_Like_Pars
Tag Likelihood Parameters
- SrvAgeTheta
Survey Age Composition Overdispersion Parameter
- FishAgeTheta
Fishery Age Composition Overdispersion Parameter
- sim_list
Simulation list