Skip to contents

Set up simulation observation processes

Usage

Setup_Sim_Observation_Proc(
  Comp_Structure,
  Comp_Srv_Like,
  base_ISS_SrvAge,
  Srv_Like_Pars,
  Comp_Fish_Like,
  base_ISS_FishAge,
  ISS_FishAge_Pattern,
  Tag_Like,
  Tag_Like_Pars,
  SrvAgeTheta,
  FishAgeTheta,
  sim_list
)

Arguments

Comp_Structure

Composition Structure (spltR_spltS, spltR_jntS)

Comp_Srv_Like

Survey Composition Likelihoods (Multinomial, Dirichlet-Multinomial, iid-Logistic-Normal)

base_ISS_SrvAge

Input sample size for survey ages

Srv_Like_Pars

Parameters for Survey Composition Likelihoods

Comp_Fish_Like

Fishery Composition Likelihoods (Multinomial, Dirichlet-Multinomial, iid-Logistic-Normal)

base_ISS_FishAge

Base Input sample size for fishery ages

ISS_FishAge_Pattern

Input sample size pattern for fishery ages. Either "constant" or follows an f pattern ("F_pattern")

Tag_Like

Tag Likelihoods (Poisson, NegBin, Multinomial_Release, Multinomial_Recapture)

Tag_Like_Pars

Tag Likelihood Parameters

SrvAgeTheta

Survey Age Composition Overdispersion Parameter

FishAgeTheta

Fishery Age Composition Overdispersion Parameter

sim_list

Simulation list