Setup values and dimensions of fishing mortality
Setup_Sim_FishMort.Rd
Setup values and dimensions of fishing mortality
Usage
Setup_Sim_FishMort(
sim_list,
sigmaC,
init_F_vals,
Fmort_pattern,
Fmort_start,
Fmort_fct,
proc_error,
proc_error_sd
)
Arguments
- sim_list
Simulation list objects
- sigmaC
Observation error for catch
- init_F_vals
Initial F values dimensioend by region and fleet
- Fmort_pattern
Fishing mortality pattern as a matrix dimensioned by region and fleet (constant, linear, one-way, two-way)
- Fmort_start
Fishing mortality start values as a matrix dimensioned by region and fleet
- Fmort_fct
Fishing mortality values for factor increases or decreases as a matrix dimensioned by region and fleet
- proc_error
If we want to add process error to fishing mortality
- proc_error_sd
value of logrnomal sd for process error to fishing mortality