Set up simulation containers and inputs for biological parameters

Set up simulation containers and inputs for biological parameters

Usage

Setup_Sim_Biologicals(
  natmort_input,
  WAA_input,
  WAA_fish_input,
  WAA_srv_input,
  MatAA_input,
  AgeingError_input = NULL,
  SizeAgeTrans_input = NULL,
  sim_list
)

Arguments

natmort_input

Natural mortality array [n_regions × n_yrs × n_ages × n_sexes × n_sims]

WAA_input

Spawning weight-at-age array [n_regions × n_yrs × n_ages × n_sexes × n_sims]

WAA_fish_input

Fishery weight-at-age array [n_regions × n_yrs × n_ages × n_sexes × n_sims]

WAA_srv_input

Survey weight-at-age array [n_regions × n_yrs × n_ages × n_sexes × n_sims]

MatAA_input

Maturity-at-age array [n_regions × n_yrs × n_ages × n_sexes × n_sims]

AgeingError_input

Ageing error matrix [n_regions × n_model_ages × n_obs_ages × n_sims]

SizeAgeTrans_input

Size-age transition matrix [n_regions × n_yrs × n_lens × n_ages × n_sexes x n_sims]

sim_list

Simulation list object from `Setup_Sim_Dim()`

See also

Other Simulation Setup: Setup_Sim_Containers(), Setup_Sim_Dim(), Setup_Sim_Fishing(), Setup_Sim_Rec(), Setup_Sim_Survey(), Setup_Sim_Tagging(), Setup_sim_env(), Simulate_Pop_Static(), run_annual_cycle(), simulation_data_to_SPoRC(), simulation_self_test()